PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 39830
Common NameMICPUCDRAFT_39830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C2H2
Protein Properties Length: 557aa    MW: 56088.1 Da    PI: 6.3724
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
39830genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008285309123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              ++C+   C++ + + s+L  H r H
    39830 285 FVCGigGCSRAYGSASSLCAHKRAH 309
              89*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-6279309IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.598285315IPR007087Zinc finger, C2H2
PROSITE patternPS000280287310IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MKPPPVKTAA AAARGTPSVR AARHSISNAT PQQTTNESKR DIATPLTAPP AGMNVAANTP  60
AANETENAAA AAGGRNADVI RGAPAPSEHS SAAAHIASQA TPGTHLRDDV GGAANANDPV  120
DASPSATKTP GDAGSLDAAS PGAAMAADAL ASVVGAAESS DAYLGNVEGA TAEREQLYNR  180
FAAAATPNPG EETKGVDDVG VGSMSAAAAA AVDAARAAAV AAVVENFNKR KATAVVDAMI  240
PPHAAAVGAK KKAPAPGVAD LFSVLLPPAK KRKPRRFLSS DQKTFVCGIG GCSRAYGSAS  300
SLCAHKRAHH PNWKEERAKQ RELDAAAALA AGENAAGKKD EKIDDDDENE DKDGKNDDDV  360
EEEEDEDESC EADVAGRAAR KEGAAALDAA ARNTHSGAWV EALAADTHGR LGALRRSRQR  420
VQRGLRDARI ACEKKPKPGA NTAGVKAAAA SAEAIAAAAA ARLLQQMESA LEVESERLTG  480
WLAKLESIAA LRMGAAGKVC GFSETEAAAL SAEEKVAAAV AEQTARAIAA AASAAAWSVD  540
GRRARAARAS AAAGLP*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003058897.10.0predicted protein
TrEMBLC1MRL80.0C1MRL8_MICPC; Predicted protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP930522
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]